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	<title>Devsim Blog</title>
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	<link>http://www.devsim.com/blog</link>
	<description>TCAD</description>
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		<item>
		<title>1D diode junction, part II</title>
		<link>http://www.devsim.com/blog/?p=169</link>
		<comments>http://www.devsim.com/blog/?p=169#comments</comments>
		<pubDate>Tue, 02 Aug 2011 22:58:40 +0000</pubDate>
		<dc:creator>Juan</dc:creator>
				<category><![CDATA[updates]]></category>

		<guid isPermaLink="false">http://www.devsim.com/blog/?p=169</guid>
		<description><![CDATA[In the previous blog post, 1D diode junction I showed some simulation results, here I share some of the actual script for the physics behind this example. For the poisson equation, the implementation is: pne = "-ElectronCharge*kahan3(Holes, -Electrons, NetDoping)" CreateNodeModel(device, region, "PotentialNodeCharge", pne) CreateNodeModelDerivative(device, region, "PotentialNodeCharge", pne, "Electrons") CreateNodeModelDerivative(device, region, "PotentialNodeCharge", pne, "Holes") equation(device=device, region=region, [...]]]></description>
			<content:encoded><![CDATA[<p>In the previous blog post, <a href="http://www.devsim.com/blog/?p=138" title="1D diode junction">1D diode junction</a> I showed some simulation results, here I share some of the actual script for the physics behind this example.</p>
<p>For the poisson equation, the implementation is:</p>
<pre>
pne = "-ElectronCharge*kahan3(Holes, -Electrons, NetDoping)"
CreateNodeModel(device, region, "PotentialNodeCharge", pne)
CreateNodeModelDerivative(device, region, "PotentialNodeCharge", pne, "Electrons")
CreateNodeModelDerivative(device, region, "PotentialNodeCharge", pne, "Holes")

equation(device=device, region=region, name="PotentialEquation", variable_name="Potential",
node_model="PotentialNodeCharge", edge_model="PotentialEdgeFlux",
time_node_model="", variable_update="log_damp")
</pre>
<p>where &#8220;PotentialEdgeFlux&#8221; was defined elsewhere in the script as &#8220;Permittivity * ElectricField&#8221;. The &#8220;kahan3&#8243; function is provided to add 3 numbers with additional precision.</p>
<p>For the electron and hole current densities, the Scharfetter-Gummel method is used to calculated the current along each edge connecting the nodes in the mesh. The Bernoulli function, B(x) and its derivative, dBdx(x) are provided in the DEVSIM interpreter</p>
<pre>
vdiffstr="(Potential@n0 - Potential@n1)/V_t"
CreateEdgeModel(device, region, "vdiff", vdiffstr)
CreateEdgeModel(device, region, "vdiff:Potential@n0", "V_t^(-1)")
CreateEdgeModel(device, region, "vdiff:Potential@n1", "-vdiff:Potential@n0")
CreateEdgeModel(device, region, "Bern01", "B(vdiff)")
CreateEdgeModel(device, region, "Bern01:Potential@n0", "dBdx(vdiff) * vdiff:Potential@n0")
CreateEdgeModel(device, region, "Bern01:Potential@n1", "-Bern01:Potential@n0")
Jn = "ElectronCharge*mu_n*EdgeInverseLength*V_t*kahan3(Electrons@n1*Bern01, Electrons@n1*vdiff, -Electrons@n0*Bern01)"
CreateEdgeModel(device, region, "ElectronCurrent", Jn)
for i in ("Electrons", "Potential", "Holes"):
  CreateEdgeModelDerivatives(device, region, "ElectronCurrent", Jn, i)
</pre>
<p>In this example, the @n0, and @n1 refers to the variables on each node of the edge. For an edgemodel, &#8220;foo&#8221;, a derivative with respect to variable on the first node, &#8220;bar&#8221;, would be &#8220;foo:bar@n0&#8243;.</p>
<p>For the Shockley Read Hall recombination model, the implementation is:</p>
<pre>
USRH="(Electrons*Holes - n_i^2)/(taup*(Electrons + n1) + taun*(Holes + p1))"
Gn = "-ElectronCharge * USRH"
Gp = "+ElectronCharge * USRH"
CreateNodeModel(device, region, "USRH", USRH)
CreateNodeModel(device, region, "ElectronGeneration", Gn)
CreateNodeModel(device, region, "HoleGeneration", Gp)
for i in ("Electrons", "Holes"):
  CreateNodeModelDerivative(device, region, "USRH", USRH, i)
  CreateNodeModelDerivative(device, region, "ElectronGeneration", Gn, i)
  CreateNodeModelDerivative(device, region, "HoleGeneration", Gp, i)
</pre>
<p>The purpose of this post is to describe some of the physics used in the previous example, and show how they are implemented within the DEVSIM software using a scripting interface.  Once a set of physical equations has been implemented, it can be placed in modules that can be reused for other simulations.</p>
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		</item>
		<item>
		<title>1D diode junction</title>
		<link>http://www.devsim.com/blog/?p=138</link>
		<comments>http://www.devsim.com/blog/?p=138#comments</comments>
		<pubDate>Mon, 01 Aug 2011 16:43:14 +0000</pubDate>
		<dc:creator>Juan</dc:creator>
				<category><![CDATA[updates]]></category>

		<guid isPermaLink="false">http://www.devsim.com/blog/?p=138</guid>
		<description><![CDATA[It&#8217;s always nice when you can get a textbook result from your simulator. This is the doping profile, and the resulting carrier densities for a forward bias of 0.5 V. The potential and electric field. The electron and hole current densities and SRH recombination.]]></description>
			<content:encoded><![CDATA[<p>It&#8217;s always nice when you can get a textbook result from your simulator.</p>
<p>This is the doping profile, and the resulting carrier densities for a forward bias of 0.5 V.<br />
<a href="http://www.devsim.com/blog/wp-content/uploads/2011/08/density.png"><img src="http://www.devsim.com/blog/wp-content/uploads/2011/08/density.png" alt="" title="Carrier and dopant density" width="668" height="594" class="alignnone size-full wp-image-140" /></a></p>
<p>The potential and electric field.<br />
<a href="http://www.devsim.com/blog/wp-content/uploads/2011/08/potential.png"><img src="http://www.devsim.com/blog/wp-content/uploads/2011/08/potential.png" alt="" title="Potential and Electric Field" width="668" height="594" class="alignnone size-full wp-image-141" /></a></p>
<p>The electron and hole current densities and SRH recombination.<br />
<a href="http://www.devsim.com/blog/wp-content/uploads/2011/08/current.png"><img src="http://www.devsim.com/blog/wp-content/uploads/2011/08/current.png" alt="" title="Current densities and recombination" width="668" height="594" class="alignnone size-full wp-image-139" /></a></p>
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			<wfw:commentRss>http://www.devsim.com/blog/?feed=rss2&#038;p=138</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Blog Registration</title>
		<link>http://www.devsim.com/blog/?p=132</link>
		<comments>http://www.devsim.com/blog/?p=132#comments</comments>
		<pubDate>Tue, 12 Apr 2011 17:31:25 +0000</pubDate>
		<dc:creator>Juan</dc:creator>
				<category><![CDATA[Announce]]></category>

		<guid isPermaLink="false">http://www.devsim.com/blog/?p=132</guid>
		<description><![CDATA[If you are interested in subscribing to this blog, please register and then send an email to info at devsim.com. Unfortunately, the blog has been hit with a lot of spam recently, so we have been wary of approving new users.]]></description>
			<content:encoded><![CDATA[<p>If you are interested in subscribing to this blog, please <em>register</em> and then <em>send an email to info at devsim.com</em>.  Unfortunately, the blog has been hit with a lot of spam recently, so we have been wary of approving new users.</p>
]]></content:encoded>
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		</item>
		<item>
		<title>Platform Support</title>
		<link>http://www.devsim.com/blog/?p=127</link>
		<comments>http://www.devsim.com/blog/?p=127#comments</comments>
		<pubDate>Fri, 03 Dec 2010 00:07:10 +0000</pubDate>
		<dc:creator>Juan</dc:creator>
				<category><![CDATA[Announce]]></category>
		<category><![CDATA[updates]]></category>

		<guid isPermaLink="false">http://www.devsim.com/blog/?p=127</guid>
		<description><![CDATA[DEVSIM is now supported on Mac OS X. The similarity to Linux and other Unix operating systems made this an easy process. DEVSIM now functions on the following platforms: Linux (32, 64 bit) Mac OS X (32, 64 bit) Windows (32 bit)]]></description>
			<content:encoded><![CDATA[<p>DEVSIM is now supported on Mac OS X.  The similarity to Linux and other Unix operating systems made this an easy process.  DEVSIM now functions on the following platforms:</p>
<li>Linux (32, 64 bit)</li>
<li>Mac OS X (32, 64 bit)</li>
<li>Windows (32 bit)</li>
]]></content:encoded>
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		</item>
		<item>
		<title>Mobility Modeling</title>
		<link>http://www.devsim.com/blog/?p=112</link>
		<comments>http://www.devsim.com/blog/?p=112#comments</comments>
		<pubDate>Tue, 03 Nov 2009 02:04:30 +0000</pubDate>
		<dc:creator>Juan</dc:creator>
				<category><![CDATA[Announce]]></category>
		<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://www.devsim.com/blog/?p=112</guid>
		<description><![CDATA[Attached are pictures from a MOSFET simulation operating in the saturation region. The simulation results are all for the same bias point using the combined electron mobility model. The Klaassen (Philips) mobility model was implemented for doping and concentration dependence. The Darwish (Lucent) model was then used to account for the mobility dependence on electric [...]]]></description>
			<content:encoded><![CDATA[<p>Attached are pictures from a MOSFET simulation operating in the saturation region.</p>
<p>The simulation results are all for the same bias point using the combined electron mobility model.</p>
<p>The Klaassen (Philips) mobility model was implemented for doping and concentration dependence.  </p>
<p><img src="http://www.devsim.com/blog/wp-content/uploads/2009/11/bulk_e1-300x265.jpg" alt="bulk_e" width="300" height="265" class="alignnone size-medium wp-image-113" /></p>
<p>The Darwish (Lucent) model was then used to account for the mobility dependence on electric field normal to current flow.  </p>
<p><img src="http://www.devsim.com/blog/wp-content/uploads/2009/11/mu_e_0-300x265.jpg" alt="mu_e_0" width="300" height="265" class="alignnone size-medium wp-image-114" /></p>
<p>The combined mobility was then scaled by the velocity saturation and is with respect to the electric field parallel to current flow to get the final result.</p>
<p><img src="http://www.devsim.com/blog/wp-content/uploads/2009/11/vsat_e-300x265.jpg" alt="vsat_e" width="300" height="265" class="alignnone size-medium wp-image-115" /></p>
<p>Future work involves adapting the original Klaassen model so that it agrees with the modifications made in the Darwish paper.</p>
<p>The full implementation of the Klaassen model is presented here, and it tries to follow the original paper.  The final mobility is placed on the edge connecting two nodes, and this is done using the geometric mean.  Please let me know if you think there are any bugs in the implementation.</p>
<p><code><br />
set mu_L_e "(mu_max_e * (300 / T)^theta1_e)"<br />
set mu_L_h "(mu_max_h * (300 / T)^theta1_h)"<br />
createNodeModel $device $region mu_L_e "${mu_L_e}"<br />
createNodeModel $device $region mu_L_h "${mu_L_h}"<br />
</code><br />
<code><br />
set mu_e_N "(mu_max_e * mu_max_e / (mu_max_e - mu_min_e) * (T/300)^(3*alpha_1_e - 1.5))"<br />
set mu_h_N "(mu_max_h * mu_max_h / (mu_max_h - mu_min_h) * (T/300)^(3*alpha_1_h - 1.5))"<br />
createNodeModel $device $region mu_e_N "${mu_e_N}"<br />
createNodeModel $device $region mu_h_N "${mu_h_N}"<br />
</code><br />
<code><br />
set mu_e_c "(mu_min_e * mu_max_e / (mu_max_e - mu_min_e)) * (300/T)^(0.5)"<br />
set mu_h_c "(mu_min_h * mu_max_h / (mu_max_h - mu_min_h)) * (300/T)^(0.5)"<br />
createNodeModel $device $region mu_e_c "${mu_e_c}"<br />
createNodeModel $device $region mu_h_c "${mu_h_c}"<br />
</code><br />
<code><br />
set PBH_e "(1.36e20/(Electrons + Holes) * (m_e) * (T/300)^2)"<br />
set PBH_h "(1.36e20/(Electrons + Holes) * (m_h) * (T/300)^2)"<br />
createNodeModel $device $region  PBH_e "$PBH_e"<br />
createNodeModelDerivative $device $region PBH_e "$PBH_e" Electrons Holes<br />
createNodeModel $device $region  PBH_h "$PBH_h"<br />
createNodeModelDerivative $device $region PBH_h "$PBH_h" Electrons Holes<br />
</code><br />
<code><br />
set Z_D "(1 + 1 / (c_D + (Nref_D / Donors)^2))"<br />
set Z_A "(1 + 1 / (c_A + (Nref_A / Acceptors)^2))"<br />
createNodeModel $device $region  Z_D "${Z_D}"<br />
createNodeModel $device $region  Z_A "${Z_A}"<br />
</code><br />
<code><br />
set N_D "(Z_D * Donors)"<br />
set N_A "(Z_A * Acceptors)"<br />
createNodeModel $device $region  N_D "${N_D}"<br />
createNodeModel $device $region  N_A "${N_A}"<br />
</code><br />
<code><br />
set N_e_sc "(N_D + N_A + Holes)"<br />
set N_h_sc "(N_A + N_D + Electrons)"<br />
createNodeModel $device $region  N_e_sc "$N_e_sc"<br />
createNodeModelDerivative $device $region N_e_sc "$N_e_sc" Electrons Holes<br />
createNodeModel $device $region  N_h_sc "$N_h_sc"<br />
createNodeModelDerivative $device $region N_h_sc "$N_h_sc" Electrons Holes<br />
</code><br />
<code><br />
set PCW_e "(3.97e13 * (1/(Z_D^3 * N_e_sc) * (T/300)^3)^(2/3))"<br />
set PCW_h "(3.97e13 * (1/(Z_A^3 * N_h_sc) * (T/300)^3)^(2/3))"<br />
createNodeModel $device $region  PCW_e "$PCW_e"<br />
createNodeModelDerivative $device $region PCW_e "$PCW_e" Electrons Holes<br />
createNodeModel $device $region  PCW_h "$PCW_h"<br />
createNodeModelDerivative $device $region PCW_h "$PCW_h" Electrons Holes<br />
</code><br />
<code><br />
set Pe "(1/(f_CW / PCW_e + f_BH/PBH_e))"<br />
set Ph "(1/(f_CW / PCW_h + f_BH/PBH_h))"<br />
createNodeModel $device $region  Pe "$Pe"<br />
createNodeModelDerivative $device $region Pe "$Pe" Electrons Holes<br />
createNodeModel $device $region  Ph "$Ph"<br />
createNodeModelDerivative $device $region Ph "$Ph" Electrons Holes<br />
</code><br />
<code><br />
set G_Pe "(1 - s1 / (s2 + (1.0/m_e * T/300)^s4 * Pe)^s3 + s5/((m_e * 300/T)^s7*Pe)^s6)"<br />
set G_Ph "(1 - s1 / (s2 + (1.0/m_h * T/300)^s4 * Ph)^s3 + s5/((m_h * 300/T)^s7*Ph)^s6)"<br />
createNodeModel $device $region  G_Pe "$G_Pe"<br />
createNodeModelDerivative $device $region G_Pe "$G_Pe" Electrons Holes<br />
createNodeModel $device $region  G_Ph "$G_Ph"<br />
createNodeModelDerivative $device $region G_Ph "$G_Ph" Electrons Holes<br />
</code><br />
<code><br />
set F_Pe "((r1 * Pe^r6 + r2 + r3 * m_e/m_h)/(Pe^r6 + r4 + r5 * m_e/m_h))"<br />
set F_Ph "((r1 * Ph^r6 + r2 + r3 * m_h/m_e)/(Ph^r6 + r4 + r5 * m_h/m_e))"<br />
createNodeModel $device $region  F_Pe "$F_Pe"<br />
createNodeModelDerivative $device $region F_Pe "$F_Pe" Electrons Holes<br />
createNodeModel $device $region  F_Ph "$F_Ph"<br />
createNodeModelDerivative $device $region F_Ph "$F_Ph" Electrons Holes<br />
</code><br />
<code><br />
set N_e_sc_eff "(N_D + G_Pe * N_A + Holes / F_Pe)"<br />
set N_h_sc_eff "(N_A + G_Ph * N_D + Electrons / F_Ph)"<br />
createNodeModel $device $region  N_e_sc_eff "$N_e_sc_eff"<br />
createNodeModelDerivative $device $region N_e_sc_eff "$N_e_sc_eff" Electrons Holes<br />
createNodeModel $device $region  N_h_sc_eff "$N_h_sc_eff"<br />
createNodeModelDerivative $device $region N_h_sc_eff "$N_h_sc_eff" Electrons Holes<br />
</code><br />
<code><br />
set mu_e_D_A_h "mu_e_N * N_e_sc/N_e_sc_eff * (Nref_1_e / N_e_sc)^alpha_1_e + mu_e_c * ((Electrons + Holes)/N_e_sc_eff)"<br />
set mu_h_D_A_e "mu_h_N * N_h_sc/N_h_sc_eff * (Nref_1_h / N_h_sc)^alpha_1_h + mu_h_c * ((Electrons + Holes)/N_h_sc_eff)"<br />
createNodeModel           $device $region mu_e_D_A_h "${mu_e_D_A_h}"<br />
createNodeModelDerivative $device $region mu_e_D_A_h "${mu_e_D_A_h}" Electrons Holes<br />
createNodeModel           $device $region mu_h_D_A_e "${mu_h_D_A_e}"<br />
createNodeModelDerivative $device $region mu_h_D_A_e "${mu_h_D_A_e}" Electrons Holes<br />
</code><br />
<code><br />
set mu_bulk_e_Node "mu_e_D_A_h * mu_L_e / (mu_e_D_A_h + mu_L_e)"<br />
createNodeModel           $device $region mu_bulk_e_Node "${mu_bulk_e_Node}"<br />
createNodeModelDerivative $device $region mu_bulk_e_Node "${mu_bulk_e_Node}" Electrons Holes<br />
</code><br />
<code><br />
set mu_bulk_h_Node "mu_h_D_A_e * mu_L_h / (mu_h_D_A_e + mu_L_h)"<br />
createNodeModel           $device $region mu_bulk_h_Node "${mu_bulk_h_Node}"<br />
createNodeModelDerivative $device $region mu_bulk_h_Node "${mu_bulk_h_Node}" Electrons Holes<br />
</code><br />
<code><br />
createGeometricMean           $device $region mu_bulk_e_Node mu_bulk_e<br />
createGeometricMeanDerivative $device $region mu_bulk_e_Node mu_bulk_e Electrons Holes<br />
createGeometricMean           $device $region mu_bulk_h_Node mu_bulk_h<br />
createGeometricMeanDerivative $device $region mu_bulk_h_Node mu_bulk_h Electrons Holes<br />
</code></p>
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			<wfw:commentRss>http://www.devsim.com/blog/?feed=rss2&#038;p=112</wfw:commentRss>
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		</item>
		<item>
		<title>SISPAD 2009</title>
		<link>http://www.devsim.com/blog/?p=105</link>
		<comments>http://www.devsim.com/blog/?p=105#comments</comments>
		<pubDate>Sat, 12 Sep 2009 18:22:04 +0000</pubDate>
		<dc:creator>Juan</dc:creator>
				<category><![CDATA[updates]]></category>

		<guid isPermaLink="false">http://www.devsim.com/blog/?p=105</guid>
		<description><![CDATA[I am glad I went to this year&#8217;s SISPAD 2009. There were many fascinating papers and I had the opportunity to meet with several researchers doing some interesting work. There were many papers using Non-Equilibrium Green&#8217;s Functions~(NEGF). I&#8217;ve always had difficulty in understanding the approach, but Dipanjan Basu from the University of Texas at Austin [...]]]></description>
			<content:encoded><![CDATA[<p>I am glad I went to this year&#8217;s SISPAD 2009.  There were many fascinating papers and I had the opportunity to meet with several researchers doing some interesting work.</p>
<p>There were many papers using Non-Equilibrium Green&#8217;s Functions~(NEGF).  I&#8217;ve always had difficulty in understanding the approach, but Dipanjan Basu from the University of Texas at Austin gave me one of the best explanations.</p>
<p>NEGF, Monte Carlo (MC), and Spherical Harmonic Expansions of the Bolztmann Equations (SHE) seemed to be popular simulation methods for nano-devices.  The molecular dynamics simulations of Dr. K.-R. Lee of KIST were quite impressive showing the interactions of Al and Co atoms.</p>
<p>I am glad to see device simulation using continuum PDE simulation is still considered important.  There is also an exciting application of this method and MC to bio-sensor applications.</p>
<p>Dr. Ancona gave an interesting talk using Density Gradient theory to model Sb-based PFET&#8217;s.  He used the COMSOL multiphysics package to do his simulations.  This piqued my interest as I am writing a generalized PDE solver of my own.  Being a finite element package (FE), it was surprising he was able to overcome the issues with current density calculations without using Scharfetter Gummel (SG).</p>
<p>Aryan Afzalian also had an interesting paper where he used COMSOL as part of his NEGF simulation method.</p>
<p>One of the most entertaining speakers was Professor Wachutka from TU Munich.  He had a fascinating discussion of the importance power devices, and the interesting effects which need to be modeled using TCAD.</p>
<p>In addition to Synopsys, TCAD International and Global TCAD Solutions were TCAD companies sponsoring the event.  It is good to see that there is room in the TCAD simulation market.</p>
<p>I was also appreciative that Clemens Heitzinger (University of Vienna) and Yang Liu (Stanford) were there to discuss bio-sensors.  Greg Rollins (Synopsys) and Valery Axelrad (SEQUOIA Design Systems) were also kind enough to share their insight into TCAD device simulation issues.</p>
<p>Many thanks to the SISPAD organizers for an excellent conference.</p>
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		<item>
		<title>Biosensor Applications in DEVSIM (Part II)</title>
		<link>http://www.devsim.com/blog/?p=94</link>
		<comments>http://www.devsim.com/blog/?p=94#comments</comments>
		<pubDate>Fri, 28 Aug 2009 04:01:12 +0000</pubDate>
		<dc:creator>Juan</dc:creator>
				<category><![CDATA[Announce]]></category>
		<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://www.devsim.com/blog/?p=94</guid>
		<description><![CDATA[As a follow up to the previous post: http://www.devsim.com/blog/?p=86 Here are the results when 3d versions of the structures were created. The active areas are in the center of the device, and the rest of the device are translucent.]]></description>
			<content:encoded><![CDATA[<p>As a follow up to the previous post:<br />
<a href="http://www.devsim.com/blog/?p=86">http://www.devsim.com/blog/?p=86<br />
</a><br />
Here are the results when 3d versions of the structures were created.  The active areas are in the center of the device, and the rest of the device are translucent.<br />

<a href='http://www.devsim.com/blog/?attachment_id=97' title='ve7_3d'><img width="150" height="150" src="http://www.devsim.com/blog/wp-content/uploads/2009/08/ve7_3d-150x150.jpg" class="attachment-thumbnail" alt="ve7_3d" title="ve7_3d" /></a>
<a href='http://www.devsim.com/blog/?attachment_id=95' title='ve0_3d'><img width="150" height="150" src="http://www.devsim.com/blog/wp-content/uploads/2009/08/ve0_3d-150x150.jpg" class="attachment-thumbnail" alt="ve0_3d" title="ve0_3d" /></a>
</p>
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		<title>Biosensor Applications in DEVSIM</title>
		<link>http://www.devsim.com/blog/?p=86</link>
		<comments>http://www.devsim.com/blog/?p=86#comments</comments>
		<pubDate>Tue, 25 Aug 2009 06:28:24 +0000</pubDate>
		<dc:creator>Juan</dc:creator>
				<category><![CDATA[updates]]></category>

		<guid isPermaLink="false">http://www.devsim.com/blog/?p=86</guid>
		<description><![CDATA[I became interested in replicating the results in this paper: Y. Liu, J. Sauer, and R. Dutton, &#8220;Effect of electro-diffusion current flow on electrostatic screening in aqueous pores,&#8221; Journal of Applied Physics, Vol. 103, p.084701, 2008 which Dr. Liu provides on his website here: http://www-tcad.stanford.edu/~yangliu/ The two plots in this post reflect the effect of [...]]]></description>
			<content:encoded><![CDATA[<p>I became interested in replicating the results in this paper:<br />
Y. Liu, J. Sauer, and R. Dutton, &#8220;Effect of electro-diffusion current flow on electrostatic screening in aqueous pores,&#8221; Journal of Applied Physics, Vol. 103, p.084701, 2008</p>
<p>which Dr. Liu provides on his website here:<br />
<a href="http://www-tcad.stanford.edu/~yangliu/">http://www-tcad.stanford.edu/~yangliu/</a></p>
<p>The two plots in this post reflect the effect of a charged macro molecule (e.g. DNA) under biased and unbiased conditions in the structure.  The structure has contacts at the top and bottom.  The plots for a bias of 0 and 7 volts are included in this post.  The plots show the potential difference when the charged macro molecule is present and not present in the aqueous pore to the center left of the picture.  More information about the significance of the result may be found in Dr. Liu&#8217;s paper.</p>
<p>In order to replicate Dr. Liu&#8217;s results, the cylindrical coordinate system was implemented in DEVSIM.  The device is cylindrical and the structure is wrapped around the left vertical axis.  The PDE&#8217;s for the potential and flux densities were implemented in a fashion similar to the standard drift diffusion formalism for TCAD simulation.</p>

<a href='http://www.devsim.com/blog/?attachment_id=87' title='ve0'><img width="150" height="150" src="http://www.devsim.com/blog/wp-content/uploads/2009/08/ve0-150x150.jpg" class="attachment-thumbnail" alt="ve0" title="ve0" /></a>
<a href='http://www.devsim.com/blog/?attachment_id=88' title='ve7'><img width="150" height="150" src="http://www.devsim.com/blog/wp-content/uploads/2009/08/ve7-150x150.jpg" class="attachment-thumbnail" alt="ve7" title="ve7" /></a>

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		<title>Porting Devsim to Windows</title>
		<link>http://www.devsim.com/blog/?p=83</link>
		<comments>http://www.devsim.com/blog/?p=83#comments</comments>
		<pubDate>Mon, 27 Jul 2009 04:41:03 +0000</pubDate>
		<dc:creator>Juan</dc:creator>
				<category><![CDATA[Announce]]></category>
		<category><![CDATA[updates]]></category>

		<guid isPermaLink="false">http://www.devsim.com/blog/?p=83</guid>
		<description><![CDATA[While our primary development platform is 64-bit Linux, work is in process to get Devsim working on 32-bit Windows. It has been challenging, but thankfully the porting process has become easier as compiler vendors have become more standards compliant. It is especially nice that the majority of the third party components of our software already [...]]]></description>
			<content:encoded><![CDATA[<p>While our primary development platform is 64-bit Linux, work is in process to get Devsim working on 32-bit Windows.  It has been challenging, but thankfully the porting process has become easier as compiler vendors have become more standards compliant.  It is especially nice that the majority of the third party components of our software already support Windows and Unix-like platforms.</p>
<p>One of the benefits of porting with a new compiler has been to identify code which is not necessarily portable across computer architectures, or entirely C++ standards compliant.  This effort has even enabled us to find a few minor defects in our implementation.</p>
<p>I am happy to report that we have a functioning build on Windows, and thorough regression testing is in progress.</p>
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		<title>Capacitance Simulation</title>
		<link>http://www.devsim.com/blog/?p=78</link>
		<comments>http://www.devsim.com/blog/?p=78#comments</comments>
		<pubDate>Sun, 21 Jun 2009 14:32:12 +0000</pubDate>
		<dc:creator>Juan</dc:creator>
				<category><![CDATA[updates]]></category>

		<guid isPermaLink="false">http://www.devsim.com/blog/?p=78</guid>
		<description><![CDATA[This is a simulation of a single conductor above a ground plane. The simulation window is actually much larger to ensure proper boundary conditions.]]></description>
			<content:encoded><![CDATA[<p>This is a simulation of a single conductor above a ground plane.  The simulation window is actually much larger to ensure proper boundary conditions.</p>
<p><img src="http://www.devsim.com/blog/wp-content/uploads/2009/06/cap1.png" alt="cap1" title="cap1" width="829" height="648" class="alignnone size-full wp-image-77" /></p>
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